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Thresholds used in fold recognition programs for classification of potentially good, medium and poor alignments
| Predicted alignment quality | |||
|---|---|---|---|
| Method |
Good |
Medium |
Poor |
| PSI-BLAST* |
< 2e-06 |
< 0.023 |
> 0.023 |
| FFAS |
<−34.5 |
< −8.5 |
> − 8.5 |
| MGenThreader |
> 0.65 |
> 0.546 |
< 0.546 |
| HHsearch* |
>95 |
>80 |
<80 |
| PCONS |
> 2.17 |
> 1.03 |
< 1.03 |
| PHYRE | < 0.085 | < 0.27 | > 0.27 |
* - the same score was used regardless of the database.
